MRIQC: individual T1w report

Summary

  • BIDS filename: sub-4088_ses-1_T1w.
  • Date and time: 2022-11-03, 18:29.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.4741546842305931
cnr2.773241967881132
efc0.5998237748645646
fber1003.0193382171975
fwhmavg4.351616666666667
fwhmx4.20408
fwhmy5.01063
fwhmz3.84014
icvscsf0.19024232270201963
icvsgm0.4155931950722165
icvswm0.3941644822257639
inumed1.4451099634170532
inurange0.6097901225090023
qi12.707208794251745e-06
qi20.009005491053916707
rpvecsf30.868329989632283
rpvegm14.853544823590664
rpvewm18.430453729152855
sizex176
sizey256
sizez256
snrcsf3.350863389877486
snrgm11.90161677326386
snrtotal12.164108994586497
snrwm21.239846820618144
snrdcsf21.747724310709927
snrdgm46.220392379904645
snrdtotal42.523488368560244
snrdwm59.602348415066174
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk3.009495099871396
summarybgmad10.992291441074116
summarybgmean20.56059894286604
summarybgmedian19.908467531204224
summarybgn2377673.0
summarybgp058.009153604507446
summarybgp9538.90160322189331
summarybgstdv9.621802977826595
summarycsfk15.611915349646395
summarycsfmad93.70589185261329
summarycsfmean389.9433845056401
summarycsfmedian364.89703822135925
summarycsfn21211.0
summarycsfp05255.78948283195496
summarycsfp95591.1899524927139
summarycsfstdv108.89385631868096
summarygmk0.30957974638848995
summarygmmad63.443163564224065
summarygmmean779.6280803102646
summarygmmedian775.5149018764496
summarygmn17158.0
summarygmp05680.5743950486183
summarygmp95892.2654781341553
summarygmstdv65.1585677054613
summarywmk0.5908501074777277
summarywmmad43.01921465210487
summarywmmean998.4786566972027
summarywmmedian1000.0458023548126
summarywmn199400.0
summarywmp05916.3844721317291
summarywmp951072.7231504917145
summarywmstdv47.083357199331545
tpmoverlapcsf0.17232471704483032
tpmoverlapgm0.44870302081108093
tpmoverlapwm0.49699243903160095
wm2max0.7150235525668862
AcquisitionMatrixPE246
AcquisitionNumber1
AcquisitionTime16:24:43.172500
BaseResolution256
BodyPartExaminedBRAIN
CoilCombinationMethodAdaptive Combine
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20211006
Dcm2bidsVersion2.1.7
DeviceSerialNumber67034
DwellTime3e-06
EchoTime0.00169
FlipAngle7
ImageOrientationPatientDICOM[-0.0727543, 0.962925, 0.259774, -0.0873375, 0.253313, -0.963434]
ImageOrientationTextSag>Cor(-5.3)>Tra(3.8)
ImageType['ORIGINAL', 'PRIMARY', 'OTHER', 'ND', 'NORM', 'MEAN']
ImagingFrequency123.258
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressFairbanks 710,Chicago ,Chicago,US,60611
InstitutionNameNU Tuna
InstitutionalDepartmentNameDepartment
InversionTime1.16
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
MatrixCoilModeGRAPPA
ModalityMR
NumberOfAverages3
ParallelReductionFactorInPlane2
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling96
PhaseEncodingSteps185
PhaseResolution0.96
PixelBandwidth650
ProcedureStepDescriptionfMRI_STUDIES^MITTAL
ProtocolNametfl_epinav_ME3_1mm_p2
PulseSequenceDetails%CustomerSeq%\tfl_mgh_epinav_ABCD
ReceiveCoilActiveElementsHC1-7;NC1,2
ReceiveCoilNameHeadNeck_64
ReconMatrixPE256
RefLinesPE36
RepetitionTime2.17
SAR0.0330403
ScanOptionsIR\PFP\WE
ScanningSequenceGR\IR
SequenceNametfl3d3_16ns
SequenceVariantSK\SP\MP\OSP
SeriesDescriptiontfl_epinav_ME3_1mm_p2 RMS
SeriesNumber19
ShimSetting[2589, 5423, -7442, 7, 39, -720, 229, -206]
SliceThickness1
SoftwareVersionssyngo MR E11
SpoilingStateTrue
StationNameMRC35427
TxRefAmp256.398
WipMemBlockPrisma_epi_moco_navigator_ABCD_tfl.prot
md5sum1755db24ed5fb95abd9a0006f48c8c1b
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.